Makran subduction zone which extended ~1000 km from strait of Hormoz to in the west to Sonmiani Bay near Karachi is the result of the subduction of Arabian oceanic plate beneath the SE of Iranian Plateau. This subduction recognized by its extensively large accretionary prism and thick sediment beneath this area. Nevertheless, the velocity structures of the crust and sediments in this zone is poorly constrained. We estimate the shear wave velocity structures of the crust (down to 40 km) of this area by using joint inversion of Receiver function and apparent RF polarization. We resolve a north-dipping high velocity anomaly beneath the on-shore part of Makran that extended to the 150 km North of Chabahar. We interpretated this high velocity anomaly as the evidence of Oceanic crust in the on-shore section of the Makran. Furthermore, our result indicates the presence of two low-velocity anomaly beneath the Chabahar and Jazmurian Depression. These low-velocity anomaly representing the thick sediment beneath these two regions. Our velocity model also, illustrate the difference of the Jazmurian depression and subduction’s magmatic arc structures.